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sanderlab / alignmentviewer

Multiple sequence alignment visualizer
http://alignmentviewer.org
MIT License
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Update load couplings to use evcouplings file format vs. evfold file format #41

Closed sacdallago closed 4 years ago

sacdallago commented 4 years ago

EVfold has been retired in favor of EVcouplings. The "load couplings" option on alignmentviewer uses the old csv file format of evfold. In evcouplings, a similar file to that provided by evfold exists, but the column names have been changed. Attached an example of such a file.

Note that I have changed the extension from csv to txt in order to upload it to GitHub, but the file will always come in .csv format: 7fc6a52079d9c810c14726423d724df5_b0.1_CouplingScores.csv.txt

In practice, from my understanding of how this used to be, this means changing the JS parser for the file to consider residue A as column "i", resudue B as column "j". The file is sorted; the first row needs to be ignored (headers).

sacdallago commented 4 years ago

What does this feature actually do?

Before loading the "couplings": image

after loading the couplings: image