Add example files for "upload annotations" and "load couplings"

[cannin]

Is it possible to get example files for "upload annotations" and "load couplings" tabs for the existing example alignment "1bkr:A"? And link to them from somewhere in the example box that says: "Or use example alignment: 1bkr:A"

[sacdallago]

Annotations file:

evcouplings has annotation files for alignments, they are not exported to the server (evcouplings.org) yet. Can be integrated; I can work on this starting 2020. Files look like:

id,name,GN,OS,PE,SV,n,Tax,RepID
sp|P11177|ODPB_HUMAN/1-359,,,,,,,,
UniRef90_A0A0L9TP22/373-704,[subseq from] TRANSKETOLASE_1 domain-containing protein,,,,,1,Phaseolus angularis TaxID=3914,A0A0L9TP22_PHAAN
UniRef90_A0A0L9TP22/764-1062,[subseq from] TRANSKETOLASE_1 domain-containing protein,,,,,1,Phaseolus angularis TaxID=3914,A0A0L9TP22_PHAAN
UniRef90_A0A1F7NS63/6-234,[subseq from] Uncharacterized protein,,,,,1,Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_72_37 TaxID=1802106,A0A1F7NS63_9BACT
UniRef90_A0A1F7NS63/236-485,[subseq from] Uncharacterized protein,,,,,1,Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_72_37 TaxID=1802106,A0A1F7NS63_9BACT
UniRef90_A0A2R6P8E3/23-152,[subseq from] 2-oxoisovalerate dehydrogenase subunit beta 1 like,,,,,1,Actinidia chinensis var. chinensis TaxID=1590841,A0A2R6P8E3_ACTCC
UniRef90_A0A2R6P8E3/158-456,[subseq from] 2-oxoisovalerate dehydrogenase subunit beta 1 like,,,,,1,Actinidia chinensis var. chinensis TaxID=1590841,A0A2R6P8E3_ACTCC
UniRef90_A0A1A9UK56/78-360,[subseq from] Uncharacterized protein,,,,,1,Glossina austeni TaxID=7395,A0A1A9UK56_GLOAU
UniRef90_A0A1A9UK56/758-1064,[subseq from] Uncharacterized protein,,,,,1,Glossina austeni TaxID=7395,A0A1A9UK56_GLOAU
UniRef90_A0A1B0G1A7/286-589,[subseq from] Transketolase,,,,,1,Glossina morsitans morsitans TaxID=37546,A0A1B0G1A7_GLOMM
UniRef90_A0A1B0G1A7/897-1206,[subseq from] Transketolase,,,,,1,Glossina morsitans morsitans TaxID=37546,A0A1B0G1A7_GLOMM
UniRef90_A0A1I7ZYC2/99-420,[subseq from] Transket_pyr domain-containing protein,,,,,1,Steinernema glaseri TaxID=37863,A0A1I7ZYC2_9BILA
UniRef90_A0A1I7ZYC2/419-500,[subseq from] Transket_pyr domain-containing protein,,,,,1,Steinernema glaseri TaxID=37863,A0A1I7ZYC2_9BILA
UniRef90_A0A068TQV6/25-358,[subseq from] Pyruvate dehydrogenase E1 component subunit beta,,,,,3,Coffea TaxID=13442,A0A068TQV6_COFCA
UniRef90_A0A1S3CBP6/30-360,[subseq from] Pyruvate dehydrogenase E1 component subunit beta,,,,,11,Mesangiospermae TaxID=1437183,A0A1S3CBP6_CUCME
UniRef90_A0A1S4CP65/28-362,[subseq from] Pyruvate dehydrogenase E1 component subunit beta,,,,,7,Solanales TaxID=4069,A0A1S4CP65_TOBAC
UniRef90_UPI00103643A4/25-366,"[subseq from] pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1",,,,,4,Camellia sinensis TaxID=4442,UPI00103643A4
UniRef90_S8D1U3/46-376,[subseq from] Pyruvate dehydrogenase E1 component subunit beta (Fragment),,,,,1,Genlisea aurea TaxID=192259,S8D1U3_9LAMI
UniRef90_A0A1S4C6W5/29-362,[subseq from] Pyruvate dehydrogenase E1 component subunit beta,,,,,8,Solanales TaxID=4069,A0A1S4C6W5_TOBAC
UniRef90_B9RFW4/23-356,[subseq from] Pyruvate dehydrogenase E1 component subunit beta,,,,,8,rosids TaxID=71275,B9RFW4_RICCO
UniRef90_A0A445H7V5/16-348,[subseq from] Pyruvate dehydrogenase E1 component subunit beta,,,,,2,Glycine soja TaxID=3848,A0A445H7V5_GLYSO
UniRef90_A0A3Q7HV38/28-361,[subseq from] Pyruvate dehydrogenase E1 component subunit beta,,,,,7,Solanum TaxID=4107,A0A3Q7HV38_SOLLC

Couplings file:

• Go to: https://evcouplings.org/jobs/562f4d256f5321db325ee9989cfe55b6
• Select "Raw evolutionary couplings (EC) table".
• download file

[cannin]

@rocreguant I made a pull request with example annotations and coupling scores. The coupling scores work, but not the annotations. Can you check and add some links on alignmentviewer.org?

[rocreguant]

I think that nick wanted to upload another example. Also didn't we discontinue the couplings?