The brainglobe atlas API was renamed from bg-atlasapi to brainglobe-atlasapi (see https://github.com/brainglobe/brainglobe-atlasapi/issues/176), including both the package name the corresponding top-level namespace. Setup now installs this new package, which updates versions from v1 to v2.
To add a couple registration but otherwise unrelated changes, this PR includes a couple other changes:
Registered images are now detected for transformed images, such as those in my_image_scale0pt1 format with registered images output to my_image. This avoid the need to use the --prefix flag when loading the image, though the flag is still needed when registering the image.
Registration parameters are now shown in the console when using ITK-Elastix, matching the behavior when using SimpleITK
The
brainglobe atlas APIwas renamed frombg-atlasapitobrainglobe-atlasapi(see https://github.com/brainglobe/brainglobe-atlasapi/issues/176), including both the package name the corresponding top-level namespace. Setup now installs this new package, which updates versions from v1 to v2.To add a couple registration but otherwise unrelated changes, this PR includes a couple other changes:
my_image_scale0pt1format with registered images output tomy_image. This avoid the need to use the--prefixflag when loading the image, though the flag is still needed when registering the image.