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sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016

R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
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Error in as.vector(data) : no method for coercing this S4 class to a vector #16

Closed YuxuanZheng94 closed 6 years ago

YuxuanZheng94 commented 6 years ago

When I performed BISCUIT in the step as following, the code gave rise to an error "Error in as.vector(data) : no method for coercing this S4 class to a vector". Would you help me with this problem? Thank you!

""" ...... [1] "Monitor debug_CM.txt for parallel process diagnostics and log_CM.txt for MAP progression" [1] "Time for creating the MAP estimates" Time difference of 6.888685 secs [1] "Resample moments per cluster" [1] "cluster is 1" """

sandhya212 commented 6 years ago

What is the value of mean_num_clusters? You have run at least until line 315 here (https://github.com/sandhya212/BISCUIT_SingleCell_IMM_ICML_2016/blob/master/Confusion_matrix_stitch_parallel_MAP.R).

YuxuanZheng94 commented 6 years ago

mean number of clusters is 25

sandhya212 commented 6 years ago

If you still have the instance open, could you please step the code from 315 till 336 and let me know at which line you got this error.