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sandialabs / OperonSEQer

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Coverage input file #2

Open sarah872 opened 2 years ago

sarah872 commented 2 years ago

Hi! Very interesting tool! I wonder how you generated the SRR10775302_sort.cov? What do you mean by scaled coverage file?

ragak commented 2 years ago

Hi, thanks for your question! The scaled coverage file just means that the we used the -scale option in bedtools genomecov to scale each file by number of reads, so that files are comparable to each other. We provide a file with the -scale option that has the number by which we want to scale for each data file. Let me know if you have any follow-up questions.