Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes; package also includes orthogonal program Islander
I think it is good to offer a "testdata" folder. I would like to see what the input format looks like.
I tried the first step, island_finder.pl, but it does not work. It kept saying the following message.
Reading file M_p_mt.txt.stats
Can't open M_p_mt.txt.stats
My input fasta file name is M_p_mt.txt. I prepared M_p_mt.tax file and put in the same folder.
Could you please tell me what's problem, and how to run this program?
From your readme file, I understood that I should run your five perl scripts in a row. Is it correct?
Hello,
I think it is good to offer a "testdata" folder. I would like to see what the input format looks like.
I tried the first step, island_finder.pl, but it does not work. It kept saying the following message.
Reading file M_p_mt.txt.stats Can't open M_p_mt.txt.stats
My input fasta file name is M_p_mt.txt. I prepared M_p_mt.tax file and put in the same folder.
Could you please tell me what's problem, and how to run this program? From your readme file, I understood that I should run your five perl scripts in a row. Is it correct?
Thank you.