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sandialabs / seacas

The Sandia Engineering Analysis Code Access System (SEACAS) is a suite of preprocessing, postprocessing, translation, and utility applications supporting finite element analysis software using the Exodus database file format.
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Build error in "Linking CXX executable struc_to_unstruc" #422

Closed gsjaardema closed 7 months ago

gsjaardema commented 11 months ago

Discussed in https://github.com/sandialabs/seacas/discussions/417

Originally posted by **erdchris** November 4, 2023 Hello. I'm trying to build the latest SEACAS under RHEL 8.8 using Intel 2022.2.0 (and GCC 8.2.0). Build dies here: [ 43%] Linking CXX executable struc_to_unstruc CMakeFiles/struc_to_unstruc.dir/struc_to_unstruc.C.o: In function `main': struc_to_unstruc.C:(.text+0x97): undefined reference to `fmt::v10::vprint(_IO_FILE*, fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' struc_to_unstruc.C:(.text+0x271): undefined reference to `fmt::v10::vprint(_IO_FILE*, fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' struc_to_unstruc.C:(.text+0x4c1): undefined reference to `fmt::v10::vprint(_IO_FILE*, fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' struc_to_unstruc.C:(.text+0x504): undefined reference to `fmt::v10::vprint(_IO_FILE*, fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' CMakeFiles/struc_to_unstruc.dir/struc_to_unstruc.C.o: In function `(anonymous namespace)::create_unstructured(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)': struc_to_unstruc.C:(.text+0x866): undefined reference to `fmt::v10::vprint(_IO_FILE*, fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' CMakeFiles/struc_to_unstruc.dir/struc_to_unstruc.C.o:struc_to_unstruc.C:(.text+0xb7b): more undefined references to `fmt::v10::vprint(_IO_FILE*, fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' follow CMakeFiles/struc_to_unstruc.dir/struc_to_unstruc.C.o: In function `(anonymous namespace)::create_unstructured(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&)': struc_to_unstruc.C:(.text+0xedb): undefined reference to `fmt::v10::vprint(fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' struc_to_unstruc.C:(.text+0x1014): undefined reference to `fmt::v10::vprint(_IO_FILE*, fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' struc_to_unstruc.C:(.text+0x140e): undefined reference to `fmt::v10::vprint(_IO_FILE*, fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' CMakeFiles/struc_to_unstruc.dir/struc_to_unstruc.C.o: In function `(anonymous namespace)::transfer_sidesets(Ioss::Region&, Ioss::Region&)': struc_to_unstruc.C:(.text+0x4e92): undefined reference to `fmt::v10::vprint(fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' CMakeFiles/struc_to_unstruc.dir/struc_to_unstruc.C.o: In function `(anonymous namespace)::transfer_nodeblock(Ioss::Region&, Ioss::Region&)': struc_to_unstruc.C:(.text+0x58a7): undefined reference to `fmt::v10::vprint(fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' struc_to_unstruc.C:(.text+0x58f1): undefined reference to `fmt::v10::vprint(fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' CMakeFiles/struc_to_unstruc.dir/struc_to_unstruc.C.o: In function `char const* fmt::v10::detail::parse_format_specs(char const*, char const*, fmt::v10::detail::dynamic_format_specs&, fmt::v10::basic_format_parse_context&, fmt::v10::detail::type)': struc_to_unstruc.C:(.text._ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE[_ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE]+0x951): undefined reference to `fmt::v10::detail::throw_format_error(char const*)' struc_to_unstruc.C:(.text._ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE[_ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE]+0xcfe): undefined reference to `fmt::v10::detail::throw_format_error(char const*)' struc_to_unstruc.C:(.text._ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE[_ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE]+0xe48): undefined reference to `fmt::v10::detail::throw_format_error(char const*)' struc_to_unstruc.C:(.text._ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE[_ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE]+0xe6e): undefined reference to `fmt::v10::detail::throw_format_error(char const*)' struc_to_unstruc.C:(.text._ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE[_ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE]+0xf91): undefined reference to `fmt::v10::detail::throw_format_error(char const*)' CMakeFiles/struc_to_unstruc.dir/struc_to_unstruc.C.o:struc_to_unstruc.C:(.text._ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE[_ZN3fmt3v106detail18parse_format_specsIcEEPKT_S5_S5_RNS1_20dynamic_format_specsIS3_EERNS0_26basic_format_parse_contextIS3_EENS1_4typeE]+0x1044): more undefined references to `fmt::v10::detail::throw_format_error(char const*)' follow libio_info_lib.so.2.0: undefined reference to `fmt::v10::detail::dragonbox::get_cached_power(int)' libio_info_lib.so.2.0: undefined reference to `std::locale fmt::v10::detail::locale_ref::get() const' libio_info_lib.so.2.0: undefined reference to `char fmt::v10::detail::decimal_point_impl(fmt::v10::detail::locale_ref)' libio_info_lib.so.2.0: undefined reference to `void fmt::v10::detail::vformat_to(fmt::v10::detail::buffer&, fmt::v10::basic_string_view, fmt::v10::detail::vformat_args::type, fmt::v10::detail::locale_ref)' libio_info_lib.so.2.0: undefined reference to `fmt::v10::detail::is_printable(unsigned int)' libio_info_lib.so.2.0: undefined reference to `fmt::v10::detail::dragonbox::decimal_fp fmt::v10::detail::dragonbox::to_decimal(double)' libio_info_lib.so.2.0: undefined reference to `fmt::v10::detail::dragonbox::decimal_fp fmt::v10::detail::dragonbox::to_decimal(float)' ../cgns/libIocgns.so.2.0: undefined reference to `fmt::v10::vformat[abi:cxx11](fmt::v10::basic_string_view, fmt::v10::basic_format_args >)' libio_info_lib.so.2.0: undefined reference to `fmt::v10::detail::thousands_sep_result fmt::v10::detail::thousands_sep_impl(fmt::v10::detail::locale_ref)' libio_info_lib.so.2.0: undefined reference to `fmt::v10::detail::write_loc(fmt::v10::appender, fmt::v10::loc_value, fmt::v10::format_specs const&, fmt::v10::detail::locale_ref)' ../libIoss.so.2.0: undefined reference to `fmt::v10::detail::print(_IO_FILE*, fmt::v10::basic_string_view)'
gsjaardema commented 11 months ago

There seems to be some issue with the intel compiler and linking to the shared libfmt.so library.

I have been able to get it to work using the header-only version. In cmake-config try making the following change:

  if [ "$COMPILER" == "intel" ]
  then
      CXX=icx
      CC=icx
      FC=ifx
      CFLAGS="-Wall -Wunused"
      CXXFLAGS="-Wall -Wextra  -Wunused -DFMT_HEADER_ONLY"
  fi

(i.e., add -DFMT_HEADER_ONLY to the CXXFLAGS)

This is not a final fix, but is a workaround for now...