Open FCYtheFreeman opened 5 years ago
qinxiaotie
commented
4 years ago Hello, I also do imaging machine learning. I am interested in your project MDD_sMRI_classification_PyTorch-master, but I have a few questions that I hope to get your answers. How can I get in touch with you? My qq is 40444062, Thank you!
sarahejazi
commented
2 years ago I was using GRETNA2.0 in matlab2013b under windows 10, when it came to the static correlation step, an error came up:
The pipeline PIPE is now being processed. Started on 23-Dec-2018 16:33:59 user: fcyoung, host: unknown, system: windows
23-Dec-2018 16:33:59 StaticFC00001 submitted (1 run / 0 fail / 0 done / 0 left) 23-Dec-2018 16:34:14 StaticFC00001 failed (0 run / 1 fail / 0 done / 0 left)
The processing of the pipeline is terminated. See report below for job completion status. 23-Dec-2018 16:34:14
The execution of the following job has failed :
StaticFC00001 ;More infos can be found in the individual log files. Use the following command to display these logs :
psom_pipeline_visu('E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaLogs\FunPreproAndNetCon\','log',JOB_NAME)All jobs have been processed, but some jobs have failed. You may want to restart the pipeline latter if you managed to fix the problems. Error using gretna_GUI_PreprocessInterface>RunBtn_Callback (line 1006) \nHC001\nMATLAB is running in headless mode. Figure windows will not be displayed. Warning: Function assert has the same name as a MATLAB builtin. We suggest you rename the function to avoid a potential name conflict.
To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.
Warning: psom:default: The following field(s) were ignored in the structure job : OutputImgFile
In psom_set_defaults at 101 In psom_run_job at 111
Log of the (matlab) job : StaticFC00001 Started on 23-Dec-2018 16:34:09 User: fcyoung host : unknown system : windows
The job starts now !
Something went bad ... the job has FAILED ! The last error message occured was : Index exceeds matrix dimensions. File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m at line 118 File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m at line 45 File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m at line 45 File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line 214 File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line 128
Checking outputs
The output file or directory E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaSFCMatrixR\rHC001.txt has not been generated! The output file or directory E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaTimeCourse\HC001.txt has not been generated!
23-Dec-2018 16:34:10 : The job has FAILED Total time used to process the job : 1.24 sec.
ans =
1Error in gui_mainfcn (line 96) feval(varargin{:});
Error in gretna_GUI_PreprocessInterface (line 42) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)gretna_GUI_PreprocessInterface('RunBtn_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
I was wandering how can I fix it. It will be super helpful if someone could make a suggestion, thank you !
Did you find any solution for this issue?
I was using GRETNA2.0 in matlab2013b under windows 10, when it came to the static correlation step, an error came up:
The pipeline PIPE is now being processed. Started on 23-Dec-2018 16:33:59 user: fcyoung, host: unknown, system: windows
23-Dec-2018 16:33:59 StaticFC00001 submitted (1 run / 0 fail / 0 done / 0 left) 23-Dec-2018 16:34:14 StaticFC00001 failed (0 run / 1 fail / 0 done / 0 left)
The processing of the pipeline is terminated. See report below for job completion status. 23-Dec-2018 16:34:14
The execution of the following job has failed :
More infos can be found in the individual log files. Use the following command to display these logs :
All jobs have been processed, but some jobs have failed. You may want to restart the pipeline latter if you managed to fix the problems. Error using gretna_GUI_PreprocessInterface>RunBtn_Callback (line 1006) \nHC001\nMATLAB is running in headless mode. Figure windows will not be displayed. Warning: Function assert has the same name as a MATLAB builtin. We suggest you rename the function to avoid a potential name conflict.
To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.
Warning: psom:default: The following field(s) were ignored in the structure job : OutputImgFile
Log of the (matlab) job : StaticFC00001 Started on 23-Dec-2018 16:34:09 User: fcyoung host : unknown system : windows
The job starts now !
Something went bad ... the job has FAILED ! The last error message occured was : Index exceeds matrix dimensions. File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m at line 118 File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m at line 45 File E:\matlab2013b\toolbox\gretna-2.0.0_release\runfun\gretna_RUN_StaticFC.m at line 45 File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line 214 File E:\matlab2013b\toolbox\gretna-2.0.0_release\psom\psom_run_job.m at line 128
Checking outputs
The output file or directory E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaSFCMatrixR\rHC001.txt has not been generated! The output file or directory E:\DpressionData\SmoothedfMRIdata\health_fmri_data\GretnaTimeCourse\HC001.txt has not been generated!
23-Dec-2018 16:34:10 : The job has FAILED Total time used to process the job : 1.24 sec.
ans =
Error in gui_mainfcn (line 96) feval(varargin{:});
Error in gretna_GUI_PreprocessInterface (line 42) gui_mainfcn(gui_State, varargin{:});
Error in @(hObject,eventdata)gretna_GUI_PreprocessInterface('RunBtn_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating uicontrol Callback
I was wandering how can I fix it. It will be super helpful if someone could make a suggestion, thank you !