Proper 23s rRNA mutation-based ERY+CLI resistance detection

sanger-bentley-group / gps-pipeline

Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)

GNU General Public License v3.0

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Proper 23s rRNA mutation-based ERY+CLI resistance detection #96

Closed HarryHung closed 5 months ago

HarryHung commented 5 months ago

Update the 23s rRNA reference sequence and mutation detection target based on: https://doi.org/10.1016/j.cmi.2016.08.001