search

sanger-pathogens / Artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
http://sanger-pathogens.github.io/Artemis
Other
236 stars 76 forks source link

Bamview issue #295

Closed fanx772 closed 5 years ago

fanx772 commented 5 years ago

I just use Bamview and downloaded it in both linux (redhat) and window. In the linux, it could not be opened. In the window (10), it could be opened but closed automatically when loading a bam file.

Error message in linux: fanx@im-drc2-141mn4 ~]$ java -jar BamView_v1.2.11.jar log4j:WARN No appenders could be found for logger (uk.ac.sanger.artemis.components.alignment.BamView). log4j:WARN Please initialize the log4j system properly. Exception in thread "main" java.lang.IllegalArgumentException: invalid range properties at javax.swing.DefaultBoundedRangeModel.(DefaultBoundedRangeModel.java:102) at javax.swing.JScrollBar.(JScrollBar.java:158) at uk.ac.sanger.artemis.components.alignment.BamView.addBamToPanel(BamView.java:2398) at uk.ac.sanger.artemis.components.alignment.BamView.(BamView.java:381) at uk.ac.sanger.artemis.components.alignment.BamView.main(BamView.java:4394)

Can you help to solve this issue? Thanks

fanx772 commented 5 years ago

btw, bamview was run with java 11 in both linux and window. Thanks

kpepper commented 5 years ago

Hi @fanx772. As you've raised an artemis-help ticket as well, we'll deal with the problem through that. Hence, I'll close this issue.