Missing dependency on htsjdk in pom.xml

sanger-pathogens / Artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

http://sanger-pathogens.github.io/Artemis

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Missing dependency on htsjdk in pom.xml #313

Closed pgrt closed 4 years ago

pgrt commented 4 years ago

Hi,

pom.xml does not mention htsjdk in the dependencies, although it is called in the code. I suggest adding

com.github.samtools htsjdk "some_version"

in the dependencies part.

Best, Pierre

kpepper commented 4 years ago

Hi Pierre. It's bundled in the picard jar, which is included as a dependency.

pgrt commented 4 years ago

Hi,

Sorry, I missed it... Thanks for showing me!