sanger-pathogens / Bio-Tradis

A set of tools to analyse the output from TraDIS analyses
https://sanger-pathogens.github.io/Bio-Tradis/
Other
22 stars 29 forks source link

Ticket 473325: Install two different versions of SAMTOOLS #51

Closed bewt85 closed 9 years ago

bewt85 commented 9 years ago

Bio::DB::Sam needs old style Samtools (<1.0) while Bio::Tradis::Parser needs a version which can parse CRAM files.

The tests should now pass but I can't help but wonder if Bio::DB::Sam could find itself asked to do something with a CRAM file...

I'll have a look in another PR