Mapping score always set to 1 if -m option used with plot_tradis

sanger-pathogens / Bio-Tradis

A set of tools to analyse the output from TraDIS analyses

https://sanger-pathogens.github.io/Bio-Tradis/

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Mapping score always set to 1 if -m option used with plot_tradis #66

Closed RoyChaudhuri closed 8 years ago

RoyChaudhuri commented 8 years ago

Using the plot_tradis command line tool, the minimum mapping quality is always set to 1 if the option -m is used. This means that genes in repeat regions are incorrectly identified as essential.