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sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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You're missing some Perl dependancies #123

Closed mscook closed 9 years ago

mscook commented 9 years ago

Installation using -

Installation - With bundled binaries instructions.

You list -

cpanm Array::Utils BioPerl Exception::Class File::Find::Rule File::Grep File::Slurp::Tiny Graph Moose Moose::Role Text::CSV

On a fresh install of Ubuntu 14.04 you also need - Log::Log4perl File::Which

andrewjpage commented 9 years ago

Thanks a million for letting me know. I've updated the readme and the website with the extra dependancies. Andrew

mscook commented 9 years ago

No problem. We have had best success with the Ubuntu/Debian instructions (using a blank Ubuntu 14.04 VM spun up via vagrant) BUT we need to force install due to failed BioPerl test failures.

On Fri, May 15, 2015 at 5:44 PM, andrewjpage notifications@github.com wrote:

Thanks a million for letting me know. I've updated the readme and the website with the extra dependancies. Andrew

— Reply to this email directly or view it on GitHub https://github.com/sanger-pathogens/Roary/issues/123#issuecomment-102302231 .

Mitchell Jon Stanton-Cook https://github.com/mscook (@mscook)

Teaching Fellow & Software Engineer/System Administrator Beatson Microbial Genomics Group http://beatsonlab.com University of Queensland

Brisbane, Australia

Software Carpentry Workshop Lead Instructor

UQ Bootcamp 02-03 July 2015 http://bio-swc-bne.github.io/2015-07-02-UQ/

Co-organiser 2015 HealthHack Brisbane

October 23-24-25 2015 http://www.healthhack.com.au

andrewjpage commented 9 years ago

Thanks for letting me know. Andrew

On 15 May 2015 at 10:56, Mitchell J Stanton-Cook notifications@github.com wrote:

No problem. We have had best success with the Ubuntu/Debian instructions (using a blank Ubuntu 14.04 VM spun up via vagrant) BUT we need to force install due to failed BioPerl test failures.

On Fri, May 15, 2015 at 5:44 PM, andrewjpage notifications@github.com wrote:

Thanks a million for letting me know. I've updated the readme and the website with the extra dependancies. Andrew

— Reply to this email directly or view it on GitHub < https://github.com/sanger-pathogens/Roary/issues/123#issuecomment-102302231

.

Mitchell Jon Stanton-Cook https://github.com/mscook (@mscook)

Teaching Fellow & Software Engineer/System Administrator Beatson Microbial Genomics Group http://beatsonlab.com University of Queensland

Brisbane, Australia

Software Carpentry Workshop Lead Instructor

UQ Bootcamp 02-03 July 2015 http://bio-swc-bne.github.io/2015-07-02-UQ/

Co-organiser 2015 HealthHack Brisbane

October 23-24-25 2015 http://www.healthhack.com.au

— Reply to this email directly or view it on GitHub https://github.com/sanger-pathogens/Roary/issues/123#issuecomment-102351124 .

tseemann commented 9 years ago

@mscook What BioPerl test failures were you getting?