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sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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[question] Can query_pan_genome be set for percentage #166

Open dutchscientist opened 9 years ago

dutchscientist commented 9 years ago

is it possible to use query_pan_genome with a percentage, just as roary? For example, when comparing two groups, be able to set thresholds like "max 30% present in group 1, min 70% present in group 2" or vice versa. Maybe it's already there and I am missing it.

Thanks :)

andrewjpage commented 9 years ago

Hi, That functionality isnt there at present, but it sounds like it would be useful. Andrew

On 23 July 2015 at 02:31, dutchscientist notifications@github.com wrote:

is it possible to use query_pan_genome with a percentage, just as roary? For example, when comparing two groups, be able to set thresholds like "max 30% present in group 1, min 70% present in group 2" or vice versa. Maybe it's already there and I am missing it.

Thanks :)

— Reply to this email directly or view it on GitHub https://github.com/sanger-pathogens/Roary/issues/166.