accessory_binary_genes.fa

sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis

http://sanger-pathogens.github.io/Roary

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accessory_binary_genes.fa #334

Closed ghost closed 7 years ago

ghost commented 7 years ago

I ran Roary on a set of B. longum genomes from NCBI (see list) and the accessory_binary_genes.fa file produced only had A and Cs.

Was wondering if this make sense?

Bifidobacterium_longum.ncbi_genome_download.log.txt

accessory_binary_genes.fa.txt

TreeT2 commented 7 years ago

Hi kengcher

the As and Cs are so the fasta file will work with FastTree it is a rough interpretation. See FAQs on the sanger page: "How was the accessory binary tree built?" > https://sanger-pathogens.github.io/Roary/