While using the command "query_pan_genome -a intersection .gff", I am getting the error:
"
Error: Cant access file Roary_output/vA2CRQZLas (where 'Roary_output' are self made folders and 'vA2CRQZLas' is the random folder which is not mde by me and every time I run the command, the name of the folder gets changed)
Usage: extract_proteome_from_gff [options] .gff
Take in GFF files and create FASTA files of the protein sequences
grep: Roary_output/vA2CRQZLas/487.1138.gff.proteome.faa: No such file or directory
grep: /home/abc/Documents/BioTech/Roary/Roary: No such file or directory
grep: Results: Is a directory
"
While using the command "query_pan_genome -a intersection .gff", I am getting the error: " Error: Cant access file Roary_output/vA2CRQZLas (where 'Roary_output' are self made folders and 'vA2CRQZLas' is the random folder which is not mde by me and every time I run the command, the name of the folder gets changed) Usage: extract_proteome_from_gff [options] .gff Take in GFF files and create FASTA files of the protein sequences
grep: Roary_output/vA2CRQZLas/487.1138.gff.proteome.faa: No such file or directory grep: /home/abc/Documents/BioTech/Roary/Roary: No such file or directory grep: Results: Is a directory "
This type of errors are coming for each .gff file
Kindly help