sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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Running Roary in rootless docker - Roary can't access files #549

Open Mike1359 opened 2 years ago

Mike1359 commented 2 years ago

Hello,

I have been running Roary through rootless docker and for some reason it's unable to access files even though the files have permissions set to 755:

docker run --rm -it sangerpathogens/roary roary -p 20 -f /representatives_gff *.gff

2022/01/27 14:11:59 Error: Cant access file GCF_000007065.1_ASM706v1_genomic.gff Usage: roary [options] *.gff

It can see the files, but for some reason cannot work with them. Is there a way to solve this issue?