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sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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how to extract the sequence of core gene or accessory gene after running roary #565

Open cylcheyanlin opened 2 years ago

cylcheyanlin commented 2 years ago

hello, I ran the roary and wanted to extract the sequences of the core genes or accessory genes in order to annotate them. But I wonder how to extract the sequence of core gene or accessory gene?

I am a freshman in this field. Could you give me a hand? Thank you very much.

Jennifer-1991 commented 2 years ago

You could try using Galaxy platform for Roary. The outputs that you require will be produced in different file formats such as .csv, .nhx, .txt and such.

D-Git-Bit commented 1 year ago

Hi @cylcheyanlin ! Did you find a way to extract the sequences of the core/accessory genes?