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sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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Using Galaxy for Roary #567

Closed Jennifer-1991 closed 2 years ago

Jennifer-1991 commented 2 years ago

I am new to programming, and I have successfully installed Roary in an Ubuntu subsytem in Windows 10. I have carried the Roary analysis on Galaxy platform. But I would like to generate the pangenome plots using the output files from Galaxy as input to the following create_pan_genome_plots.R, roary_plots.py, and Scoary using Roary in an Ubuntu subsystem in Windows 10.

I ran the roary_plots.py and its not generating any graphs in png, or anything. Is it not possible? For instance, I run this python3 roary_plots.py /mnt/d/HMBIN/Roary/Data/trial.nwk /mnt/d/HMBIN/Roary/Data/gpa.csv

It doesnt show any errors, but I can't find any results also. I am confused.

Please help!

Jennifer-1991 commented 2 years ago

Sorry! Checked the appropriate folders in the Windows and found the results!