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sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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core_gene_alignment.newick #570

Closed valery-shap closed 1 year ago

valery-shap commented 2 years ago

Hello,

I have this file in the output folder. But there is no description of it in tutorial. How was it produced? core_gene_alignment.aln + FastTree?

Best regards, Valery

zzzapperant commented 1 year ago

As mentioned in the tutorial(http://sanger-pathogens.github.io/Roary/), you can use FastTree –nt –gtr core_gene_alignment.aln > my_tree.newick