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sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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Use of uninitialized value in require at /usr/lib/x86_64-linux-gnu/perl5/5.34/Encode.pm line 70. #577

Open RightCake1 opened 2 years ago

RightCake1 commented 2 years ago

"Screenshot from 2022-08-01 11-42-35

I'm fairly new to this and I'm getting this when i type in " roary -e --mafft -p 8 -f ROARY_dir **.gff
what should i do?

Barrington-wustl commented 2 years ago

i am having the same issue did you find a solution?

RightCake1 commented 2 years ago

Yes, i purged the file and reinstalled it. It worked fine after that. Hope that helps you as well.

On Tue, Oct 25, 2022, 2:41 AM Barrington-wustl @.***> wrote:

i am having the same issue did you find a solution?

— Reply to this email directly, view it on GitHub https://github.com/sanger-pathogens/Roary/issues/577#issuecomment-1289590247, or unsubscribe https://github.com/notifications/unsubscribe-auth/ARI5HCEZVHK6CNM7ZBYKVDTWE3X7DANCNFSM55GIHMLA . You are receiving this because you authored the thread.Message ID: @.***>

Barrington-wustl commented 2 years ago

did you purge it by sudo apt remove roary because that isn't working for me

RightCake1 commented 2 years ago

I had some dependancies that were half installed and causing the issues. If i remember correctly, it was probably something libs. so i just purged that and tried installing it fresh. and then install roary.

On Tue, Oct 25, 2022, 2:50 AM Barrington-wustl @.***> wrote:

did you purge it by sudo apt remove roary because that isn't working for me

— Reply to this email directly, view it on GitHub https://github.com/sanger-pathogens/Roary/issues/577#issuecomment-1289600813, or unsubscribe https://github.com/notifications/unsubscribe-auth/ARI5HCGKGHC44EESNAMBVL3WE3ZBBANCNFSM55GIHMLA . You are receiving this because you authored the thread.Message ID: @.***>

lskatz commented 2 years ago

@RightCake1 what was your command to purge and then reinstall?

RightCake1 commented 2 years ago

@RightCake1 what was your command to purge and then reinstall?

Hellow brother. I believe it was something like " sudo apt purge program_name ". I honestly forgot which app it was. I can just recall that it was like lib x86 something that wasnt properly installed due to network issues at that time. I hope that helps!

zxk514 commented 1 year ago

I also got a same issue. Someone can give me useful advice to fix the question?

451106689 commented 1 year ago

I found that this error did not affect the normal operation.