sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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Error: Cant access the groups file: clustered_proteins #579

Open ryu1013 opened 1 year ago

ryu1013 commented 1 year ago

$query_pan_genome -a difference --input_set_one 1.gff,2.gff --input_set_two 3.gff,4.gff,5.gff

Error: Cant access the groups file: clustered_proteins Usage: query_pan_genome [options] *.gff Perform set operations on the pan genome to see the gene differences between groups of isolates.

How can I solve this issue? There is the error message "Error: Cant access the groups file: clustered_proteins" when I run query_pan_genome. I have no idea about clustered_proteins.

Thijmenvanbrenk commented 1 year ago

Same issue as #387 Make sure to run query_pan_genome in the directory with the clustered_proteins file

ryu1013 commented 1 year ago

Same issue as #387 Make sure to run query_pan_genome in the directory with the clustered_proteins file

Thank you. I have found it in the direcotry.