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sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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kraken #595

Open zzzapperant opened 1 year ago

zzzapperant commented 1 year ago

Hi, when I installed kraken database, I met some problems with kraken, so I decided to install this using kraken2 related command. But when I use roary with ‘-qc -k’ , it didn't work: kraken-report: database ("/data/workdir/zhangj/kraken_db") does not contain necessary file database.kdb . So I want to know how to solve this problem. Is it necessary to install kraken database? Can roary use kraken2?

KJ-Ma commented 1 year ago

I met with this problem too, if you sloved that?