search

sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
Other
315 stars 190 forks source link

EXCEPTION: Bio::Root::Exception ------------- MSG: Failed validation of sequence '1'. Invalid characters were: '''''''''' #601

Open Psedhai opened 1 year ago

Psedhai commented 1 year ago

Hi, how to solve this issue?

Thank you in advance.

------------ EXCEPTION: Bio::Root::Exception ------------- MSG: Failed validation of sequence '1'. Invalid characters were: '''''''''' STACK: Error::throw STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:449 STACK: Bio::PrimarySeq::validate_seq /usr/share/perl5/Bio/PrimarySeq.pm:338 STACK: Bio::PrimarySeq::_set_seq_by_ref /usr/share/perl5/Bio/PrimarySeq.pm:287 STACK: Bio::PrimarySeq::seq /usr/share/perl5/Bio/PrimarySeq.pm:272 STACK: Bio::Seq::seq /usr/share/perl5/Bio/Seq.pm:572 STACK: Bio::PrimarySeqI::translate /usr/share/perl5/Bio/PrimarySeqI.pm:709 STACK: Bio::Roary::ExtractProteomeFromGFF::_fastatranslate /usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm:156 STACK: Bio::Roary::ExtractProteomeFromGFF::_convert_nucleotide_to_protein /usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm:164 STACK: Bio::Roary::ExtractProteomeFromGFF::fasta_file /usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm:29 STACK: Bio::Roary::CommandLine::ExtractProteomeFromGff::run /usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm:90 STACK: /usr/bin/extract_proteome_from_gff:14