Wrong naming of virulence genes when using VirulenceFinder database

sanger-pathogens / ariba

Antimicrobial Resistance Identification By Assembly

http://sanger-pathogens.github.io/ariba/

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Wrong naming of virulence genes when using VirulenceFinder database #196

Open Camilsek opened 7 years ago

Camilsek commented 7 years ago

Hi, We have tried the VirulenceFinder database, but when we look at the output files the naming of the virulence genes seems to relate to "cluster numbers". Looking at individual files it seems like the first column contain the correct name of the virulence gene and the last column has a free text With the original name. Could it be possible to the change names for the files uploaded to phandango?

telatin commented 5 years ago

I had an issue with an older release of ariba that was indeed downloading the wrong dataset instead of VirulenceFinder. The current version fixed that problem.