sanger-pathogens / assembly_improvement

Improve the quality of a denovo assembly by scaffolding and gap filling
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Add iva qc wrapper #51

Closed nds closed 9 years ago

nds commented 9 years ago

This PR adds a wrapper for iva_qc (Bio::AssemblyImprovement::IvaQC::Main). It does the following:

1) Accept some arguments but set defaults if none passed 2) Run iva_qc in a working directory 3) Clean up files that are not needed

There is also a test file that does black box testing of the above.