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sanger-pathogens
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assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
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Filter contigs smaller thana read length
#35
martinghunt
closed
11 years ago
0
Order contigs by length
#34
CraigPorter
closed
11 years ago
0
Default insert size
#33
andrewjpage
closed
11 years ago
0
bug fix - _build_processed_input_assembly() should return the name of a ...
#32
martinghunt
closed
11 years ago
0
added use file::copy to make move work
#31
martinghunt
closed
11 years ago
0
output files to temporary directory
#30
martinghunt
closed
11 years ago
0
Added step at end of improve assembly to filter small contigs
#29
martinghunt
closed
11 years ago
0
GPL
#28
andrewjpage
closed
11 years ago
0
Farm3 updates
#27
andrewjpage
closed
11 years ago
0
namespace for parsing input files in sspace
#26
andrewjpage
closed
11 years ago
0
Added missing make path
#25
nds
closed
11 years ago
0
Removed some lines from perl module that were pasted in error
#24
nds
closed
11 years ago
0
Normalisation and primer removal
#23
nds
closed
11 years ago
0
Do not try to learn the kmer threshold. Does not work when coverage drop...
#22
nds
closed
11 years ago
0
Add sga step
#21
nds
closed
11 years ago
0
Add sga step
#20
nds
closed
11 years ago
0
Add sga step
#19
nds
closed
11 years ago
0
rename contigs with fullstop in basename
#18
andrewjpage
closed
11 years ago
0
handle non word characters in base name
#17
andrewjpage
closed
11 years ago
0
Rename contigs
#16
andrewjpage
closed
11 years ago
0
Add sga step
#15
nds
closed
11 years ago
0
Add sga error correction step before running velvet
#14
nds
closed
11 years ago
0
Add sga step
#13
nds
closed
11 years ago
0
promer
#12
andrewjpage
closed
11 years ago
0
Improve documentation and add abacas
#11
andrewjpage
closed
11 years ago
0
redeclare var
#10
andrewjpage
closed
12 years ago
0
descaffold an assembly
#9
andrewjpage
closed
12 years ago
0
Abacas iterative
#8
andrewjpage
closed
12 years ago
0
Abacas support
#7
andrewjpage
closed
12 years ago
0
user output directories
#6
andrewjpage
closed
12 years ago
0
use gap filler to improve assembly script
#5
andrewjpage
closed
12 years ago
0
reference is not manditory
#4
andrewjpage
closed
12 years ago
0
abacas
#3
andrewjpage
closed
12 years ago
0
Gap filler
#2
andrewjpage
closed
12 years ago
0
First version which scaffolds with sspace
#1
andrewjpage
closed
12 years ago
0
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