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sanger-pathogens
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chado-tools
Tools for accessing CHADO databases.
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Gffex
#27
Closed
puethe
closed
5 years ago
puethe
commented
5 years ago
chado export fasta: options 'contigs', 'genes' and 'proteins' for sequence type
chado export gff: Full functionality
option for 'chado query' and 'chado extract' to export results as JSON (as alternative to CSV)
speed up database queries by using IDs
improved testing for chado import/export without database creation
tests for all modifications