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sanger-pathogens / chado-tools

Tools for accessing CHADO databases.
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python-chado #7

Open abretaud opened 6 years ago

abretaud commented 6 years ago

Hi I've just discovered these new scripts for chado (from https://github.com/bioconda/bioconda-recipes/pull/10465), it's great! Since a few months we've worked on another python module named python-chado. It allows to query and load data into a chado database, using an autmatically built chado dump and a chado docker image. Are you aware of it? A few features are maybe redundant but I think the 2 modules are complementary. If you're interested maybe we could work together?

ping @erasche @bgruening

bgruening commented 6 years ago

Hi @andrewjpage @puethe! Great to see you working on this as well! What about having a TC at some point and present the different libraries and aims to each other to see how all fits together.

Let us now!

puethe commented 6 years ago

Hi there, that looks interesting! Nice to see we're not the only ones dealing with chado access. Our product is still in a very young stage, we plan to develop it further in the next few weeks/months, mostly tailored to the chado setup used at the Sanger institute. Would be nice to have a chat indeed. Due to conferences and leave we're pretty booked for the next month, but I'll get back to you by the end of September.