Java requirement error in java

sanger-pathogens / circlator

A tool to circularize genome assemblies

http://sanger-pathogens.github.io/circlator/

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Closed conchoecia closed 3 years ago

conchoecia commented 5 years ago

In the docker version of circlator, --assembler canu crashes with the following error

ERROR:  mhap overlapper requires java version at least 1.8.0; you have unknown (from 'java').
ERROR:  'java -showversion' reports:

kimnegrette3 commented 3 years ago

Hi! did you get past this error? I just got the same message while running circlator in the docker. Thanks!

cwarden45 commented 3 years ago

I am also getting the same error when trying to use Circlator for analysis of Canu assembly and corrected reads data (through the Docker image).

Lfulcrum commented 3 years ago

This should be fixed in the latest release (v1.5.5-docker5).