using Nanopore reads, our assembly was made on masurca using nanopore and illumina reads.
This is the error I got:
ERROR:
ERROR: Failed with exit code 1. (rc=256)
ERROR:
Don't panic, but a mostly harmless error occurred and canu failed.
Disk space available: 179.056 GB
Last 50 lines of the relevant log file (/home/user5/Task_II/II.MinION_multiplex_Klebsiellapneumoniae/CA.mr.41.15.15.0.02/circlator/TESTlator/03.assemble/unitigging/canu.utgStore/partitionedReads.err):
tgStore::tgStore()-- ERROR, didn't find any tigs in the store.
tgStore::tgStore()-- asked for store '/home/user5/Task_II/II.MinION_multiplex_Klebsiellapneumoniae/CA.mr.41.15.15.0.02/circlator/TESTlator/03.assemble/unitigging/canu.utgStore', correct?
tgStore::tgStore()-- asked for version '1', correct?
I run circlator with this command:
circlator all --assembler canu --merge_min_id 85 --merge_breaklen 1000 --threads 24 final.genome.scf.fasta canu_correct/Kleb_canu_correct.correctedReads.fasta.gz circlator
using Nanopore reads, our assembly was made on masurca using nanopore and illumina reads.
This is the error I got:
ERROR: ERROR: Failed with exit code 1. (rc=256) ERROR:
Don't panic, but a mostly harmless error occurred and canu failed.
Disk space available: 179.056 GB
Last 50 lines of the relevant log file (/home/user5/Task_II/II.MinION_multiplex_Klebsiellapneumoniae/CA.mr.41.15.15.0.02/circlator/TESTlator/03.assemble/unitigging/canu.utgStore/partitionedReads.err):
tgStore::tgStore()-- ERROR, didn't find any tigs in the store. tgStore::tgStore()-- asked for store '/home/user5/Task_II/II.MinION_multiplex_Klebsiellapneumoniae/CA.mr.41.15.15.0.02/circlator/TESTlator/03.assemble/unitigging/canu.utgStore', correct? tgStore::tgStore()-- asked for version '1', correct?
canu failed with 'failed to partition the reads'.
Can you help me with this?