sanger-pathogens gff3toembl issues

sanger-pathogens / gff3toembl

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

http://sanger-pathogens.github.io/gff3toembl/

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issues

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Cannot open *.gff_fixed.gff: No such file or directory

#78 ireneortega opened 2 years ago
0
No module named 'gt' from bioconda install

#77 tobsecret opened 4 years ago
0
Added changelog

#76 ssjunnebo closed 5 years ago
0
fix readme and add to codecov

#75 ssjunnebo closed 5 years ago
0
Installation and running problems

#74 apredeus closed 6 years ago
3
using six for urllib.parse for support of python 3

#73 sachalau closed 7 years ago
2
update LICENSE and AUTHORS

#72 ssjunnebo closed 7 years ago
0
How to prepare a novel strain/isolate of a bacteria?

#71 peterjc opened 7 years ago
11
Include XX line between features (FT) and sequence (SQ)

#70 peterjc closed 7 years ago
1
Unescape percent encoding from GFF3, then line wrap

#69 peterjc closed 7 years ago
0
More wrapping tests; Fix ignored test

#68 peterjc closed 7 years ago
0
EMBL files wrap at 80 characters, not 79

#67 peterjc closed 7 years ago
2
Sq exceeds 80

#66 andrewjpage closed 7 years ago
0
Sequence header SQ line can exceed 80 characters

#65 peterjc closed 7 years ago
5
Change PROKKA to Prokka in repo description

#64 tseemann closed 7 years ago
1
mac brew install does not work.

#63 andersgs closed 6 years ago
1
linuxbrew recipe needs updating

#62 andersgs closed 7 years ago
1
fix typos

#61 satta closed 7 years ago
2
Docker file

#60 andrewjpage closed 7 years ago
0
I have added this to my brew repo (updated to 1.0.9)

#59 tseemann closed 7 years ago
2
Can we pip install this?

#58 tseemann opened 8 years ago
2
check codon start is a number

#57 andrewjpage closed 8 years ago
0
Remove colour tag

#56 andrewjpage closed 8 years ago
0
Remove double quoting

#55 andrewjpage closed 8 years ago
0
Break on hyphen

#54 andrewjpage closed 8 years ago
0
Avoid breaking long words in product attributes

#53 peterjc closed 8 years ago
2
Un-escape %2C to comma etc for GFF3 to EMBL

#52 peterjc closed 8 years ago
1
Bad line-breaks in long words, consider breaking at hyphenation

#51 peterjc opened 8 years ago
4
Should unescape %2C in GFF column 9 as comma in EMBL

#50 peterjc closed 8 years ago
2
Ec dash

#49 andrewjpage closed 8 years ago
0
Make publication arguments a little more explicit

#48 peterjc closed 8 years ago
1
Wrap publication lines

#47 andrewjpage closed 8 years ago
0
Long author lists break instead of line wrapping

#46 peterjc closed 8 years ago
3
Format for listing authors not defined

#45 peterjc closed 8 years ago
1
Add note that it only works on Python 2.7

#44 bewt85 closed 8 years ago
0
self.assertItemsEqual is Python 2.7 only

#43 peterjc closed 8 years ago
2
Document versions of Python supported

#42 peterjc closed 8 years ago
5
Non-standard indentation of Python code

#41 peterjc closed 8 years ago
1
Python 3 support

#40 peterjc closed 8 years ago
1
Use Python 3 ready exception, print, etc

#39 peterjc closed 8 years ago
0
Failure to install on Biolinux

#38 dutchscientist closed 7 years ago
29
Complete genome naming

#37 andrewjpage closed 9 years ago
0
v1.0.0 vs v1.0

#36 sjackman closed 9 years ago
3
README.md: Fix a spelling mistake gff3toemble

#35 sjackman closed 9 years ago
2
Add TravisCI Support (and fix setup.py)

#34 bewt85 closed 9 years ago
0
OSX and dlylib

#33 mcnelsonphd closed 9 years ago
1
case insensitive hypo search

#32 andrewjpage closed 9 years ago
0
get the version of the script with --version

#31 andrewjpage closed 9 years ago
0
Empty product hypo protein

#30 andrewjpage closed 9 years ago
0
Update README and version

#29 bewt85 closed 9 years ago
0