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sanger-pathogens / iva

de novo virus assembler of Illumina paired reads
http://sanger-pathogens.github.io/iva/
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Kmc threads #55

Closed martinghunt closed 8 years ago

martinghunt commented 8 years ago

This PR changes to run kmc with >1 thread. By default, kmc now uses the same number of threads as everything else. Previously it always used one thread.

In case this causes issues, also add a user option --kmc_onethread, to force kmc to use one thread.