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sanger-pathogens / iva

de novo virus assembler of Illumina paired reads
http://sanger-pathogens.github.io/iva/
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IVA run error #85

Open nbbosa opened 5 years ago

nbbosa commented 5 years ago

The following command failed with exit code 1 bash run_kmc.sh

The output was:

** Error: Cannot open temporary file /Users/Nicholas/Desktop/shiver/MyOutputDirectory/tmp.run_kmc.9_d1enoh/kmc_00253.bin

med-ss20 commented 2 years ago

I got the same error, unfortunately:

% iva --test TestOut
Running iva in test mode...
Copied input test files into here: /Users/sviat/Desktop/IVA/TestOut
Current working directory: /Users/sviat/Desktop/IVA/TestOut
Running iva on the test data with the command:
/Users/sviat/opt/anaconda3/envs/iva/bin/iva --threads 1 --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out
The following command failed with exit code 1
/Users/sviat/opt/anaconda3/envs/iva/bin/iva --threads 1 --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out

The output was:

The following command failed with exit code 1
bash run_kmc.sh

The output was:

*******
Error: Error: Cannot open temporary file /Users/sviat/Desktop/IVA/TestOut/iva.out/tmp.run_kmc.kf8wo8yo/kmc_00253.bin

iva was installed whthin conda environment with python=3.5 MacOS 10.15.7