sanger-pathogens / mlst_check

Multilocus sequence typing by blast using the schemes from PubMLST
http://sanger-pathogens.github.io/mlst_check/
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Order alleles consistently when concatonating #62

Closed bewt85 closed 8 years ago

bewt85 commented 8 years ago

Previously, when users concatenated allele sequences, they were sorted alphabetically by genomic sequence. In a small number of cases, these meant that the genes came out in a different order which made comparing the output from different samples annoying. Following this change, the sequences are sorted by the name of their allele.

I had a quick look for something to turn a fasta into a phylip and hacked a one off python script. Any suggestions of a good tool for next time would be great.