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sanger-pathogens / mlst_check

Multilocus sequence typing by blast using the schemes from PubMLST
http://sanger-pathogens.github.io/mlst_check/
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readdir() attempted on invalid dirhandle #87

Closed hafizmtalha closed 4 years ago

hafizmtalha commented 4 years ago

I m runnning the following command on my 2 samples and getting this error. Any help ??? get_sequencetype -s "Mycobacterium tuberclosis" -d 5 assembly.fasta ../S2202/S2202_/assembly.fasta readdir() attempted on invalid dirhandle $dh at /usr/local/share/perl/5.26.1/Bio/MLST/SearchForFiles.pm line 26. rewinddir() attempted on invalid dirhandle $dh at /usr/local/share/perl/5.26.1/Bio/MLST/SearchForFiles.pm line 31. readdir() attempted on invalid dirhandle $dh at /usr/local/share/perl/5.26.1/Bio/MLST/SearchForFiles.pm line 32.

magnusmanske commented 4 years ago

Duplicate of issue #65 , please see there for the solution