Thank you so much for the awesome Conda package to be able to run MLST locally. I am trying to run it on my Mac system. I created a separate Conda environment, and then installed the Conda package perl-bio-mlst-check. Then I ran the download_mlst_databases script, but it gave the following error -
Can't locate LWP/UserAgent.pm in @INC (you may need to install the LWP::UserAgent module) (@INC contains: /software/pathogen/internal/prod/lib ../lib /Users/chahat/anaconda3/envs/microbiology/lib/site_perl/5.26.2/darwin-thread-multi-2level /Users/chahat/anaconda3/envs/microbiology/lib/site_perl/5.26.2 /Users/chahat/anaconda3/envs/microbiology/lib/5.26.2/darwin-thread-multi-2level /Users/chahat/anaconda3/envs/microbiology/lib/5.26.2 .) at /Users/chahat/anaconda3/envs/microbiology/lib/site_perl/5.26.2/Bio/MLST/DatabaseSettings.pm line 7.
BEGIN failed--compilation aborted at /Users/chahat/anaconda3/envs/microbiology/lib/site_perl/5.26.2/Bio/MLST/DatabaseSettings.pm line 7.
Compilation failed in require at /Users/chahat/anaconda3/envs/microbiology/bin/download_mlst_databases line 11.
BEGIN failed--compilation aborted at /Users/chahat/anaconda3/envs/microbiology/bin/download_mlst_databases line 11.
I think the main error is Can't locate LWP/UserAgent.pm in @INC. I have created a brand new conda environment for this. Any ideas how I could solve this problem?
Hello!
Thank you so much for the awesome Conda package to be able to run MLST locally. I am trying to run it on my Mac system. I created a separate Conda environment, and then installed the Conda package
perl-bio-mlst-check. Then I ran thedownload_mlst_databasesscript, but it gave the following error -I think the main error is
Can't locate LWP/UserAgent.pm in @INC. I have created a brand new conda environment for this. Any ideas how I could solve this problem?Thank you so much!