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sanger-pathogens / mlst_check

Multilocus sequence typing by blast using the schemes from PubMLST
http://sanger-pathogens.github.io/mlst_check/
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get_sequence_type -s "Pseudomonas aeruginosa" *.fna Can't locate Bio/Perl.pm in @INC (you may need to install the Bio::Perl module) #94

Open neelam19051 opened 2 years ago

neelam19051 commented 2 years ago

Hi, i am trying to run mlst_check and i am getting this error . could you please help me out?

*get_sequence_type -s "Pseudomonas aeruginosa" .fna** Can't locate Bio/Perl.pm in @INC (you may need to install the Bio::Perl module) (@INC contains: /software/pathogen/internal/prod/lib ./lib ../lib /home/bvs/perl5/lib/perl5/x86_64-linux-thread-multi /home/bvs/perl5/lib/perl5 /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2 /home/bvs/anaconda3/envs/myenv/lib/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/5.26.2 .) at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9. BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9. Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8. BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8. Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7. BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7. Compilation failed in require at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14. BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.

Thank you