sanger-pathogens mlst_check issues

sanger-pathogens / mlst_check

Multilocus sequence typing by blast using the schemes from PubMLST

http://sanger-pathogens.github.io/mlst_check/

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issues

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Added AUTHORS file

#45 aslett1 closed 10 years ago
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changes in main bin file due to addition of -md5 option in the lib

#44 jyothishnt closed 10 years ago
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Changes in get_emm_sequence_type due to addition of -md5 option

#43 jyothishnt closed 10 years ago
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Fixed error when using -a option

#42 carlacummins closed 10 years ago
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Tests modified and passed successfully

#41 jyothishnt closed 10 years ago
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New -md5 option

#40 jyothishnt closed 10 years ago
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Improved error handling for unknown species

#39 carlacummins closed 10 years ago
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Skip corrupt database

#38 andrewjpage closed 10 years ago
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Updated sequence type choosing

#37 carlacummins closed 11 years ago
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Edits to sequence type choosing

#36 carlacummins closed 11 years ago
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output concat sequence where all are unknown

#35 andrewjpage closed 11 years ago
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renamed LICENSE

#34 CraigPorter closed 11 years ago
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GPL

#33 andrewjpage closed 11 years ago
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filter out main allele

#32 andrewjpage closed 11 years ago
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use new st

#31 andrewjpage closed 11 years ago
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use st instead of gene id

#30 andrewjpage closed 11 years ago
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When theres contamination allow for the alternative matches to be displayed in the results

#29 andrewjpage closed 11 years ago
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make scripts executable

#28 andrewjpage closed 11 years ago
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Emm st

#27 andrewjpage closed 11 years ago
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added unit test for matching alleles with underscore eg S.pyogenes

#26 CraigPorter closed 11 years ago
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ignore mlst clade for cdiff

#25 andrewjpage closed 11 years ago
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filter underscores in header name

#24 andrewjpage closed 11 years ago
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tests

#23 andrewjpage closed 11 years ago
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Update documentation to work better with CPAN

#22 andrewjpage closed 11 years ago
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Absent locus

#21 CraigPorter closed 11 years ago
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Corrected bug in results filter for multiple species

#20 CraigPorter closed 12 years ago
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Search multiple mlst

#19 CraigPorter closed 12 years ago
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Check input fasta files exist.

#18 CraigPorter closed 12 years ago
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allow multiple underscores and dashes in allele name

#17 andrewjpage closed 12 years ago
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allow for underscores in allele name

#16 andrewjpage closed 12 years ago
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docs

#15 andrewjpage closed 12 years ago
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Phylip output support

#14 andrewjpage closed 12 years ago
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Package up for CPAN

#13 andrewjpage closed 12 years ago
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flag novel combinations

#12 andrewjpage closed 12 years ago
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reverse complement

#11 andrewjpage closed 12 years ago
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novel combinations

#10 andrewjpage closed 12 years ago
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tmp dir in current working directory

#9 andrewjpage closed 12 years ago
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try to fix broken input fastas and more overall tests

#8 andrewjpage closed 12 years ago
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concat fasta sequences

#7 andrewjpage closed 12 years ago
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mostly working for groups of files

#6 andrewjpage closed 12 years ago
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default to base dir

#5 andrewjpage closed 12 years ago
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tidy up

#4 andrewjpage closed 12 years ago
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pull in databases from xml

#3 andrewjpage closed 12 years ago
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full destination

#2 andrewjpage closed 12 years ago
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initial build

#1 andrewjpage closed 12 years ago
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