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sanger-pathogens / panito

Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
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Option to output standard PHYLIP distance matrix #5

Open tseemann opened 7 years ago

tseemann commented 7 years ago

The .phy distance matrix is a standard format supported by quicktree, phyml and others.

See my whole argument here: https://github.com/marbl/Mash/issues/9

In fact, I think quicktree might be good for building trees from panito outputs.

andrewjpage commented 7 years ago

Brilliant thanks for the pointer.

On 8 Jul 2017 9:45 am, "Torsten Seemann" notifications@github.com wrote:

The .phy distance matrix is a standard format supported by quicktree, phyml and others.

See my whole argument here: marbl/Mash#9 https://github.com/marbl/Mash/issues/9

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/sanger-pathogens/panito/issues/5, or mute the thread https://github.com/notifications/unsubscribe-auth/AABeV5aeG3r-yO8mj0_oigT_mSxJ0Aeiks5sL0GggaJpZM4ORrbf .

andrewsanchez commented 7 years ago

I would also find this useful.