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sanger-pathogens
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plasmidtron
Assembling the cause of phenotypes and genotypes from NGS data
https://sanger-pathogens.github.io/plasmidtron/
GNU General Public License v3.0
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Input files for plasmidtron
#32
clabe-wekesa
opened
4 years ago
1
Remove reference to plasmidtron email
#31
garethpeat
closed
4 years ago
0
Include tests in README
#30
ssjunnebo
closed
5 years ago
0
Add to codecov
#29
ssjunnebo
closed
6 years ago
0
Include conda and docker badges
#28
ssjunnebo
closed
6 years ago
0
update readme
#27
ssjunnebo
closed
6 years ago
0
run error of plasmidtron 0.4.1
#26
lindechun
opened
6 years ago
4
Error handling
#25
andrewjpage
closed
6 years ago
0
Remove nonword characters from complex config files sample names
#24
andrewjpage
closed
7 years ago
0
max cov
#23
andrewjpage
closed
7 years ago
0
update LICENSE
#22
ssjunnebo
closed
7 years ago
0
check for assembly
#21
andrewjpage
closed
7 years ago
0
fix y axes in kmer plot
#20
andrewjpage
closed
7 years ago
0
Extend parallelism
#19
andrewjpage
closed
7 years ago
0
use GNU parallel
#18
andrewjpage
closed
7 years ago
0
abandon python multithreading
#17
andrewjpage
closed
7 years ago
0
FASTA kmer min threshold
#16
andrewjpage
closed
7 years ago
0
Bug fix for memory leak in when using multiple processes
#15
andrewjpage
closed
7 years ago
0
Improve initial parallelisation
#14
andrewjpage
closed
7 years ago
0
bug fix to make plotkmers work with KMC 2.3.0
#13
andrewjpage
closed
7 years ago
0
handle dashes in input filenames
#12
andrewjpage
closed
7 years ago
0
FASTA support
#11
andrewjpage
closed
7 years ago
0
FASTA support and plot kmers
#10
andrewjpage
closed
7 years ago
0
skip assembly step if no data
#9
andrewjpage
closed
7 years ago
0
Ignore blank lines in spreadsheet
#8
andrewjpage
closed
7 years ago
0
reassemble first assembly and wrap methods text
#7
andrewjpage
closed
7 years ago
0
Allow for careful flag in SPAdes
#6
andrewjpage
closed
7 years ago
0
Allow for low coverage contigs to be filtered out
#5
andrewjpage
closed
7 years ago
0
change defaults
#4
andrewjpage
closed
7 years ago
0
Rescaffold final output
#3
andrewjpage
closed
7 years ago
0
Output scaffolds, cleanup SPAdes output, expand documentation
#2
andrewjpage
closed
7 years ago
0
Allow intersection
#1
andrewjpage
closed
7 years ago
0