sanger-pathogens / pymummer

Python3 module for running MUMmer and reading the output
Other
26 stars 11 forks source link

Coords finding in matches #19

Closed martinghunt closed 8 years ago

martinghunt commented 8 years ago

This PR adds a new method that, for a given nucmer alignment, works out the query coords corresponding to a reference coord. It takes into account indels when calculating the coord.