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sanger-pathogens / seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads
https://sanger-pathogens.github.io/seroba/
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Got an error massage through docker with Ubuntu20.04 LTS #58

Closed snakano0527 closed 3 years ago

snakano0527 commented 3 years ago

When I run seroBA using docker 20.10.1 in Ubuntu20.04LTS, I got an error massage as follows,

Traceback (most recent call last): File "/usr/local/bin/seroba", line 4, in import('pkg_resources').run_script('seroba==1.0.2', 'seroba') File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 650, in run_script self.require(requires)[0].run_script(script_name, ns) File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 1453, in run_script exec(script_code, namespace, namespace) File "/usr/local/lib/python3.8/dist-packages/seroba-1.0.2-py3.8.egg/EGG-INFO/scripts/seroba", line 86, in File "/usr/local/lib/python3.8/dist-packages/seroba-1.0.2-py3.8.egg/seroba/tasks/sero_run.py", line 13, in run File "/usr/local/lib/python3.8/dist-packages/seroba-1.0.2-py3.8.egg/seroba/serotyping.py", line 34, in init TypeError: unsupported operand type(s) for /: 'NoneType' and 'float'

How can I solve this problem?

sreerampeela commented 2 years ago

Hi..any suggestions on how this error was resolved for you?