Hi..any suggestions on how this error was resolved for you?

sanger-pathogens / seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads

https://sanger-pathogens.github.io/seroba/

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Hi..any suggestions on how this error was resolved for you? #64

Open sreerampeela opened 2 years ago

sreerampeela commented 2 years ago

Hi..any suggestions on how this error was resolved for you? I am using singularity image on centos7 without admin previleges.

Originally posted by @sreerampeela in https://github.com/sanger-pathogens/seroba/issues/58#issuecomment-1066983006

J0N35 commented 2 years ago

adding --coverage 20 option in command, in which 20 is the default coverage value of task Serotyping as a workaround. It seems to forget to set default value in argparse.