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sanger-pathogens / seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads
https://sanger-pathogens.github.io/seroba/
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Swiss_NT #72

Open tauqeer9 opened 1 year ago

tauqeer9 commented 1 year ago

Hello I am trying to understand the difference between "Swiss_NT" and "untypable" serotypes in Seroba. I have a set of non-encapsulated S. pneumoniae strains from the published literature which I serotyped again using Seroba. Some are called "Swiss_NT" while some are predicted as "untypable" by Seroba. I can not find any information on "Swiss_NT" in the Seroba manual. Is there any paper that explains this serotype?

Thanks Tauqeer

garfinjm commented 11 months ago

I'd also be interested to know what "Swiss_NT" refers to, we have had some pop up in recently collected samples.

Thanks, Jake