search

sanger-pathogens / seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads
https://sanger-pathogens.github.io/seroba/
Other
17 stars 16 forks source link

Run Seroba with PneumoCat v1.2.1?? #77

Open arif-tanmoy opened 11 months ago

arif-tanmoy commented 11 months ago

Hi, Noticed an issue while setting up the database for Seroba. The program is downloading an outdated version of the Pneumocat database (v1.1). The subsequent versions of Pneumocat have included important revisions, particularly on serotype 15A and serogroup 19.

Is there a way to run Seroba using the Pneumocat database v1.2.1?? Thanks.

Oliver-Lorenz-dev commented 9 months ago

Hello, You can use this fork of seroBA to run with PneumoCaT v1.2.1: https://github.com/sanger-bentley-group/seroba

arif-tanmoy commented 9 months ago

Thanks, @Oliver-Lorenz-dev . I will try out the forked version's code.