Recommendation for multiple genome alignment

sanger-pathogens / snp-sites

Finds SNP sites from a multi-FASTA alignment file

http://sanger-pathogens.github.io/snp-sites/

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Open snayfach opened 2 years ago

snayfach commented 2 years ago

Do the authors have any recommendations for a tool to generate fast bacterial genome alignments that can be input to snp-sites?

tasosmitsi commented 2 years ago

If you are looking for a multiple sequence alignment you can try MAFFT. How long are these bacterial genome ?