sanger-pathogens / snp-sites

Finds SNP sites from a multi-FASTA alignment file
http://sanger-pathogens.github.io/snp-sites/
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./configure: line 3036: syntax error near unexpected token `CHECK,check' ./configure: line 3036: `PKG_CHECK_MODULES(CHECK,check >= 0.8.2,have_check="yes",' #108

Open nick-pestell opened 2 years ago

nick-pestell commented 2 years ago

Installing from source in docker container with ubuntu:20.04 base image.

I have insured that libcheck is installed with apt-get install check as per issue #81

Cloning into 'snp-sites'...
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:14: installing './compile'
configure.ac:7: installing './config.guess'
configure.ac:7: installing './config.sub'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
src/Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
./configure: line 3036: syntax error near unexpected token `CHECK,check'
./configure: line 3036: `PKG_CHECK_MODULES(CHECK,check >= 0.8.2,have_check="yes",'