How to specify the reference sequence

sanger-pathogens / snp-sites

Finds SNP sites from a multi-FASTA alignment file

http://sanger-pathogens.github.io/snp-sites/

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How to specify the reference sequence #109

Open ACColin opened 2 years ago

ACColin commented 2 years ago

Hi, I have a Multiple Sequence Alignment file and would like to generate a vcf file with it. I have an accession in there that I want to use as the reference, is there a way to specify it? Thanks